J3_7TOQ_039
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 7TOQ|1|A25S|U|4882, 7TOQ|1|A25S|A|4938, 7TOQ|1|A25S|C|4940, 7TOQ|1|A25S|A|4943, 7TOQ|1|A25S|C|4944, 7TOQ|1|A25S|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOQ|1|A25S|C|4749
7TOQ|1|A25S|G|4750
7TOQ|1|A25S|G|4751
7TOQ|1|A25S|U|4752
7TOQ|1|A25S|U|4753
7TOQ|1|A25S|G|4754
*
7TOQ|1|A25S|C|4879
7TOQ|1|A25S|C|4880
7TOQ|1|A25S|U|4881
7TOQ|1|A25S|U|4882
7TOQ|1|A25S|C|4883
*
7TOQ|1|A25S|G|4936
7TOQ|1|A25S|C|4937
7TOQ|1|A25S|A|4938
7TOQ|1|A25S|C|4939
7TOQ|1|A25S|C|4940
7TOQ|1|A25S|G|4941
7TOQ|1|A25S|C|4942
7TOQ|1|A25S|A|4943
7TOQ|1|A25S|C|4944
7TOQ|1|A25S|G|4945
7TOQ|1|A25S|U|4946
7TOQ|1|A25S|U|4947
7TOQ|1|A25S|C|4948
7TOQ|1|A25S|G|4949
7TOQ|1|A25S|U|4950
7TOQ|1|A25S|G|4951
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL06
- 60S ribosomal protein L6
- Chain AL14
- 60S ribosomal protein L14
- Chain AL16
- uL13
- Chain AL33
- 60S ribosomal protein L35a
Coloring options: