J3_7TOR_005

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7TOR|1|A18S|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A18S|C|1094
7TOR|1|A18S|U|1095
7TOR|1|A18S|G|1096
*
7TOR|1|A18S|U|1136
7TOR|1|A18S|U|1137
7TOR|1|A18S|C|1138
7TOR|1|A18S|C|1139
7TOR|1|A18S|G|1140
*
7TOR|1|A18S|C|1147
7TOR|1|A18S|A|1148
7TOR|1|A18S|A|1149
7TOR|1|A18S|A|1150
7TOR|1|A18S|G|1151

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS21

eS21

Chain AS22

40S ribosomal protein S15a

Chain AS26

eS26

Chain AS27

40S ribosomal protein S27