J3_7TOR_025
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7TOR|1|A28S|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_025 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1097
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|C|4241
7TOR|1|A28S|U|4242
7TOR|1|A28S|C|4243
*
7TOR|1|A28S|G|4267
7TOR|1|A28S|A|4268
7TOR|1|A28S|G|4269
*
7TOR|1|A28S|C|4278
7TOR|1|A28S|A|4279
7TOR|1|A28S|A|4280
7TOR|1|A28S|A|4281
7TOR|1|A28S|A|4282
7TOR|1|A28S|G|4283
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL05
- 60S ribosomal protein L5
- Chain AL11
- 60S ribosomal protein L11
- Chain AL21
- 60S ribosomal protein L21
- Chain PTRN
- Transfer RNA; tRNA
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