3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGG*UAAGA*UA
Length
10 nucleotides
Bulged bases
7TOR|1|A18S|G|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOR_030 not in the Motif Atlas
Geometric match to J3_4V88_080
Geometric discrepancy: 0.164
The information below is about J3_4V88_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.3
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

7TOR|1|A18S|U|682
7TOR|1|A18S|G|683
7TOR|1|A18S|G|684
*
7TOR|1|A18S|U|918
7TOR|1|A18S|A|919
7TOR|1|A18S|A|920
7TOR|1|A18S|G|921
7TOR|1|A18S|A|922
*
7TOR|1|A18S|U|1022
7TOR|1|A18S|A|1023

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS07
eS7
Chain AS11
40S ribosomal protein S11
Chain AS13
40S ribosomal protein S13
Chain AS22
40S ribosomal protein S15a
Chain AS23
40S ribosomal protein S23
Chain AS27
40S ribosomal protein S27

Coloring options:


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