J3_7TOR_034

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

7TOR|1|A28S|U|354, 7TOR|1|A28S|A|362, 7TOR|1|A58S|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOR_034 not in the Motif Atlas

Homologous match to J3_8C3A_047

Geometric discrepancy: 0.0749

The information below is about J3_8C3A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24554.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|C|351
7TOR|1|A28S|G|352
7TOR|1|A28S|A|353
7TOR|1|A28S|U|354
7TOR|1|A28S|A|355
7TOR|1|A28S|G|356
7TOR|1|A28S|U|357
7TOR|1|A28S|C|358
7TOR|1|A28S|A|359
7TOR|1|A28S|A|360
7TOR|1|A28S|C|361
7TOR|1|A28S|A|362
7TOR|1|A28S|A|363
7TOR|1|A28S|G|364
7TOR|1|A28S|U|365
7TOR|1|A28S|A|366
7TOR|1|A28S|C|367
*
7TOR|1|A28S|G|374
7TOR|1|A28S|G|375
7TOR|1|A28S|A|376
7TOR|1|A28S|A|377
7TOR|1|A28S|A|378
7TOR|1|A28S|G|379
*
7TOR|1|A58S|C|21
7TOR|1|A58S|U|22
7TOR|1|A58S|C|23
7TOR|1|A58S|G|24

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26

Chain AL37

60S ribosomal protein L37

Chain AL39

60S ribosomal protein L39