J3_7TOR_034
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7TOR|1|A28S|U|354, 7TOR|1|A28S|A|362, 7TOR|1|A58S|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_034 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0749
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|C|351
7TOR|1|A28S|G|352
7TOR|1|A28S|A|353
7TOR|1|A28S|U|354
7TOR|1|A28S|A|355
7TOR|1|A28S|G|356
7TOR|1|A28S|U|357
7TOR|1|A28S|C|358
7TOR|1|A28S|A|359
7TOR|1|A28S|A|360
7TOR|1|A28S|C|361
7TOR|1|A28S|A|362
7TOR|1|A28S|A|363
7TOR|1|A28S|G|364
7TOR|1|A28S|U|365
7TOR|1|A28S|A|366
7TOR|1|A28S|C|367
*
7TOR|1|A28S|G|374
7TOR|1|A28S|G|375
7TOR|1|A28S|A|376
7TOR|1|A28S|A|377
7TOR|1|A28S|A|378
7TOR|1|A28S|G|379
*
7TOR|1|A58S|C|21
7TOR|1|A58S|U|22
7TOR|1|A58S|C|23
7TOR|1|A58S|G|24
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL26
- 60S ribosomal protein L26
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
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