3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
7TOR|1|A28S|U|354, 7TOR|1|A28S|A|362, 7TOR|1|A58S|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOR_034 not in the Motif Atlas
Homologous match to J3_8C3A_047
Geometric discrepancy: 0.0749
The information below is about J3_8C3A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_24554.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
7

Unit IDs

7TOR|1|A28S|C|351
7TOR|1|A28S|G|352
7TOR|1|A28S|A|353
7TOR|1|A28S|U|354
7TOR|1|A28S|A|355
7TOR|1|A28S|G|356
7TOR|1|A28S|U|357
7TOR|1|A28S|C|358
7TOR|1|A28S|A|359
7TOR|1|A28S|A|360
7TOR|1|A28S|C|361
7TOR|1|A28S|A|362
7TOR|1|A28S|A|363
7TOR|1|A28S|G|364
7TOR|1|A28S|U|365
7TOR|1|A28S|A|366
7TOR|1|A28S|C|367
*
7TOR|1|A28S|G|374
7TOR|1|A28S|G|375
7TOR|1|A28S|A|376
7TOR|1|A28S|A|377
7TOR|1|A28S|A|378
7TOR|1|A28S|G|379
*
7TOR|1|A58S|C|21
7TOR|1|A58S|U|22
7TOR|1|A58S|C|23
7TOR|1|A58S|G|24

Current chains

Chain A28S
28S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL04
60S ribosomal protein L4
Chain AL26
60S ribosomal protein L26
Chain AL37
60S ribosomal protein L37
Chain AL39
60S ribosomal protein L39

Coloring options:


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