J3_7TOR_040

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOR_040 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1404

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7TOR|1|A28S|A|2598
7TOR|1|A28S|G|2599
7TOR|1|A28S|A|2600
7TOR|1|A28S|A|2601
7TOR|1|A28S|G|2602
*
7TOR|1|A28S|C|2737
7TOR|1|A28S|C|2738
*
7TOR|1|A28S|G|2742
7TOR|1|A28S|A|2743
7TOR|1|A28S|A|2744
7TOR|1|A28S|A|2745
7TOR|1|A28S|A|2746
7TOR|1|A28S|U|2747

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL34

60S ribosomal protein L34

Chain AL43

60S ribosomal protein L37a