J3_7TOS_019

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_019 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1505

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|C|1298
7TOS|1|23S|G|1299
7TOS|1|23S|G|1300
7TOS|1|23S|A|1301
7TOS|1|23S|A|1302
7TOS|1|23S|G|1303
*
7TOS|1|23S|C|1625
7TOS|1|23S|A|1626
7TOS|1|23S|G|1627
*
7TOS|1|23S|C|1639
7TOS|1|23S|A|1640
7TOS|1|23S|A|1641
7TOS|1|23S|G|1642

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains