J3_7TOS_034

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7TOS|1|23S|U|321, 7TOS|1|23S|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1577

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7TOS|1|23S|G|297
7TOS|1|23S|G|298
7TOS|1|23S|A|299
7TOS|1|23S|A|300
7TOS|1|23S|G|301
*
7TOS|1|23S|C|316
7TOS|1|23S|G|317
7TOS|1|23S|C|318
7TOS|1|23S|G|319
7TOS|1|23S|A|320
7TOS|1|23S|U|321
7TOS|1|23S|A|322
7TOS|1|23S|C|323
7TOS|1|23S|A|324
7TOS|1|23S|G|325
*
7TOS|1|23S|C|337
7TOS|1|23S|G|338
7TOS|1|23S|U|339
7TOS|1|23S|A|340
7TOS|1|23S|C|341

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L24

Ribosomal protein L24