J3_7TOS_037
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7TOS|1|23S|A|2388, 7TOS|1|23S|U|2390, 7TOS|1|23S|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOS_037 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0911
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7TOS|1|23S|G|2282
7TOS|1|23S|C|2283
7TOS|1|23S|A|2284
*
7TOS|1|23S|U|2384
7TOS|1|23S|C|2385
7TOS|1|23S|A|2386
7TOS|1|23S|U|2387
7TOS|1|23S|A|2388
7TOS|1|23S|G|2389
7TOS|1|23S|U|2390
7TOS|1|23S|G|2391
7TOS|1|23S|A|2392
7TOS|1|23S|U|2393
7TOS|1|23S|C|2394
7TOS|1|23S|C|2395
*
7TOS|1|23S|G|2421
7TOS|1|23S|C|2422
7TOS|1|23S|U|2423
7TOS|1|23S|C|2424
7TOS|1|23S|A|2425
7TOS|1|23S|A|2426
7TOS|1|23S|C|2427
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L15
- 50S ribosomal protein L15
- Chain L27
- 50S ribosomal protein L27
- Chain L33
- 50S ribosomal protein L33
- Chain L35
- 50S ribosomal protein L35
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