J3_7TTU_004

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7TTU|1|1|U|731, 7TTU|1|1|G|837, 7TTU|1|1|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_004 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1986

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7TTU|1|1|U|728
7TTU|1|1|G|729
7TTU|1|1|A|730
7TTU|1|1|U|731
7TTU|1|1|C|732
7TTU|1|1|U|733
7TTU|1|1|A|734
*
7TTU|1|1|U|818
7TTU|1|1|A|819
7TTU|1|1|G|820
*
7TTU|1|1|C|836
7TTU|1|1|G|837
7TTU|1|1|A|838
7TTU|1|1|A|839

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain P

50S ribosomal protein L34