J3_7TTU_005

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_005 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1583

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7TTU|1|1|C|743
7TTU|1|1|A|744
7TTU|1|1|G|745
*
7TTU|1|1|C|777
7TTU|1|1|G|778
7TTU|1|1|A|779
7TTU|1|1|A|780
7TTU|1|1|C|781
*
7TTU|1|1|G|805
7TTU|1|1|A|806
7TTU|1|1|U|807
7TTU|1|1|G|808

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2