J3_7TTU_018

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_018 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1095

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7TTU|1|1|G|1468
7TTU|1|1|G|1469
7TTU|1|1|G|1470
7TTU|1|1|A|1471
7TTU|1|1|C|1472
7TTU|1|1|G|1473
*
7TTU|1|1|C|1611
7TTU|1|1|C|1612
*
7TTU|1|1|G|1615
7TTU|1|1|A|1616
7TTU|1|1|A|1617
7TTU|1|1|A|1618
7TTU|1|1|A|1619
7TTU|1|1|G|1620
7TTU|1|1|C|1621

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2