J3_7TUT_005
3D structure
- PDB id
- 7TUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 7TUT|1|K|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TUT_005 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1643
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7TUT|1|K|G|1545
7TUT|1|K|C|1546
7TUT|1|K|A|1547
7TUT|1|K|G|1548
*
7TUT|1|K|C|1580
7TUT|1|K|G|1581
7TUT|1|K|U|1582
7TUT|1|K|A|1583
7TUT|1|K|G|1584
*
7TUT|1|K|U|1609
7TUT|1|K|C|1610
7TUT|1|K|C|1611
7TUT|1|K|G|1612
7TUT|1|K|A|1613
7TUT|1|K|C|1614
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- Ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- eL43
Coloring options: