J3_7TUT_021
3D structure
- PDB id
- 7TUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 7TUT|1|K|G|409, 7TUT|1|K|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TUT_021 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3021
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7TUT|1|K|U|380
7TUT|1|K|U|381
7TUT|1|K|G|382
7TUT|1|K|A|383
7TUT|1|K|A|384
7TUT|1|K|A|385
7TUT|1|K|A|386
7TUT|1|K|G|387
7TUT|1|K|A|388
7TUT|1|K|A|389
7TUT|1|K|C|390
*
7TUT|1|K|G|401
7TUT|1|K|A|402
7TUT|1|K|G|403
7TUT|1|K|U|404
7TUT|1|K|U|405
7TUT|1|K|C|406
7TUT|1|K|A|407
7TUT|1|K|A|408
7TUT|1|K|G|409
7TUT|1|K|A|410
7TUT|1|K|G|411
7TUT|1|K|G|412
7TUT|1|K|G|413
7TUT|1|K|C|414
7TUT|1|K|G|415
*
7TUT|1|v|C|19
7TUT|1|v|A|20
Current chains
- Chain K
- 28S ribosomal RNA
- Chain v
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain 4
- Coiled-coil domain containing 47
- Chain 8
- Calcium load-activated calcium channel
- Chain B
- Nascent chain
- Chain C
- 60S ribosomal protein L4
- Chain P
- uL22
- Chain Y
- uL24
- Chain l
- eL39
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