J3_7TUT_025

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

7TUT|1|K|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TUT_025 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.0929

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

7TUT|1|K|G|4228
7TUT|1|K|U|4229
7TUT|1|K|C|4230
*
7TUT|1|K|G|4331
7TUT|1|K|C|4332
7TUT|1|K|C|4333
7TUT|1|K|U|4334
7TUT|1|K|C|4335
7TUT|1|K|A|4336
7TUT|1|K|C|4337
7TUT|1|K|G|4338
7TUT|1|K|A|4339
7TUT|1|K|U|4340
7TUT|1|K|C|4341
7TUT|1|K|C|4342
*
7TUT|1|K|G|4370
7TUT|1|K|G|4371
7TUT|1|K|U|4372
7TUT|1|K|G|4373
7TUT|1|K|U|4374
7TUT|1|K|C|4375

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain Q

eL18

Chain T

eL21

Chain a

60S ribosomal protein L27a

Chain o

eL42