J3_7U2I_008

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

7U2I|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2I_008 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.0489

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7U2I|1|1A|C|1306
7U2I|1|1A|A|1307
7U2I|1|1A|A|1308
7U2I|1|1A|G|1309
*
7U2I|1|1A|C|1605
7U2I|1|1A|G|1606
7U2I|1|1A|C|1607
7U2I|1|1A|A|1608
7U2I|1|1A|A|1609
7U2I|1|1A|A|1610
7U2I|1|1A|C|1611
*
7U2I|1|1A|G|1620
7U2I|1|1A|U|1621
7U2I|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34