J3_7U2I_024

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2I_024 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.0717

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7U2I|1|1a|C|1063
7U2I|1|1a|G|1064
7U2I|1|1a|U|1065
7U2I|1|1a|C|1066
7U2I|1|1a|A|1067
7U2I|1|1a|G|1068
*
7U2I|1|1a|C|1107
7U2I|1|1a|G|1108
7U2I|1|1a|C|1109
7U2I|1|1a|A|1110
7U2I|1|1a|A|1111
7U2I|1|1a|C|1112
7U2I|1|1a|C|1113
*
7U2I|1|1a|G|1187
7U2I|1|1a|A|1188
7U2I|1|1a|C|1189
7U2I|1|1a|G|1190
7U2I|1|1a|A|1191
7U2I|1|1a|C|1192
7U2I|1|1a|G|1193

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1c

30S ribosomal protein S3

Chain 1e

30S ribosomal protein S5

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z