J3_7U2I_064

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7U2I|1|2A|U|504, 7U2I|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2I_064 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0606

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7U2I|1|2A|G|30
7U2I|1|2A|C|31
*
7U2I|1|2A|G|474
7U2I|1|2A|U|475
7U2I|1|2A|G|476
7U2I|1|2A|A|477
7U2I|1|2A|A|478
7U2I|1|2A|A|479
7U2I|1|2A|A|480
7U2I|1|2A|G|481
7U2I|1|2A|A|482
7U2I|1|2A|A|483
7U2I|1|2A|C|484
*
7U2I|1|2A|G|496
7U2I|1|2A|A|497
7U2I|1|2A|G|498
7U2I|1|2A|U|499
7U2I|1|2A|G|500
7U2I|1|2A|A|501
7U2I|1|2A|A|502
7U2I|1|2A|A|503
7U2I|1|2A|U|504
7U2I|1|2A|A|505
7U2I|1|2A|G|506
7U2I|1|2A|A|507
7U2I|1|2A|G|508
7U2I|1|2A|C|509
7U2I|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24