J3_7U2J_004

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7U2J|1|1A|G|686, 7U2J|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_004 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0419

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7U2J|1|1A|C|683
7U2J|1|1A|G|684
7U2J|1|1A|A|685
7U2J|1|1A|G|686
7U2J|1|1A|C|687
7U2J|1|1A|U|688
7U2J|1|1A|A|689
*
7U2J|1|1A|U|773
7U2J|1|1A|A|774
7U2J|1|1A|G|775
*
7U2J|1|1A|C|791
7U2J|1|1A|G|792
7U2J|1|1A|A|793
7U2J|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2