J3_7U2J_009

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_009 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.054

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

7U2J|1|1A|G|1344
7U2J|1|1A|C|1345
7U2J|1|1A|G|1346
7U2J|1|1A|G|1347
7U2J|1|1A|G|1348
7U2J|1|1A|A|1349
7U2J|1|1A|C|1350
*
7U2J|1|1A|G|1381
7U2J|1|1A|G|1382
7U2J|1|1A|C|1383
7U2J|1|1A|A|1384
7U2J|1|1A|G|1385
*
7U2J|1|1A|C|1402
7U2J|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23