J3_7U2J_037

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_037 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.0409

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7U2J|1|2A|U|2091
7U2J|1|2A|U|2092
7U2J|1|2A|G|2093
*
7U2J|1|2A|C|2196
7U2J|1|2A|U|2197
7U2J|1|2A|A|2198
7U2J|1|2A|A|2199
7U2J|1|2A|C|2200
*
7U2J|1|2A|G|2223
7U2J|1|2A|G|2224
7U2J|1|2A|A|2225
7U2J|1|2A|C|2226
7U2J|1|2A|A|2227
7U2J|1|2A|G|2228

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9