J3_7U2J_065

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7U2J|1|2A|U|448, 7U2J|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_065 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0725

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

7U2J|1|2A|C|32
7U2J|1|2A|U|33
7U2J|1|2A|C|34
7U2J|1|2A|G|35
*
7U2J|1|2A|C|445
7U2J|1|2A|G|446
7U2J|1|2A|A|447
7U2J|1|2A|U|448
7U2J|1|2A|A|449
7U2J|1|2A|G|450
7U2J|1|2A|C|451
7U2J|1|2A|G|452
7U2J|1|2A|C|453
7U2J|1|2A|A|454
7U2J|1|2A|C|455
7U2J|1|2A|C|456
7U2J|1|2A|A|457
7U2J|1|2A|G|458
7U2J|1|2A|U|459
7U2J|1|2A|A|460
7U2J|1|2A|C|461
*
7U2J|1|2A|G|468
7U2J|1|2A|G|469
7U2J|1|2A|A|470
7U2J|1|2A|A|471
7U2J|1|2A|A|472
7U2J|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23