J3_7U2J_066

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

7U2J|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_066 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0528

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7U2J|1|2A|C|297
7U2J|1|2A|G|298
7U2J|1|2A|A|299
7U2J|1|2A|A|300
7U2J|1|2A|G|301
*
7U2J|1|2A|C|316
7U2J|1|2A|G|317
7U2J|1|2A|C|318
7U2J|1|2A|C|319
7U2J|1|2A|A|320
7U2J|1|2A|G|321
7U2J|1|2A|A|322
7U2J|1|2A|G|323
7U2J|1|2A|A|324
7U2J|1|2A|G|325
*
7U2J|1|2A|C|337
7U2J|1|2A|G|338
7U2J|1|2A|U|339
7U2J|1|2A|A|340
7U2J|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24