J3_7UCJ_007
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAG*C(B9H)AUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7UCJ|1|5|U|2788, 7UCJ|1|5|A|2789
- QA status
- Modified nucleotides: B9H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCJ_007 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.1369
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7UCJ|1|5|G|2402
7UCJ|1|5|A|2403
7UCJ|1|5|A|2404
7UCJ|1|5|G|2405
*
7UCJ|1|5|C|2785
7UCJ|1|5|B9H|2786
7UCJ|1|5|A|2787
7UCJ|1|5|U|2788
7UCJ|1|5|A|2789
7UCJ|1|5|U|2790
7UCJ|1|5|C|2791
*
7UCJ|1|5|G|2800
7UCJ|1|5|U|2801
7UCJ|1|5|C|2802
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
Coloring options: