3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAG*C(B9H)AUAUC*GUC
Length
14 nucleotides
Bulged bases
7UCJ|1|5|U|2788, 7UCJ|1|5|A|2789
QA status
Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UCJ_007 not in the Motif Atlas
Homologous match to J3_8P9A_054
Geometric discrepancy: 0.1369
The information below is about J3_8P9A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

7UCJ|1|5|G|2402
7UCJ|1|5|A|2403
7UCJ|1|5|A|2404
7UCJ|1|5|G|2405
*
7UCJ|1|5|C|2785
7UCJ|1|5|B9H|2786
7UCJ|1|5|A|2787
7UCJ|1|5|U|2788
7UCJ|1|5|A|2789
7UCJ|1|5|U|2790
7UCJ|1|5|C|2791
*
7UCJ|1|5|G|2800
7UCJ|1|5|U|2801
7UCJ|1|5|C|2802

Current chains

Chain 5
28s rRNA

Nearby chains

Chain g
60S ribosomal protein L34
Chain j
60S ribosomal protein L37
Chain l
60S ribosomal protein L39

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