J3_7UCJ_024

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

7UCJ|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UCJ_024 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1446

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|C|1218
7UCJ|1|9|B8Q|1219
7UCJ|1|9|A|1220
7UCJ|1|9|G|1221
*
7UCJ|1|9|C|1645
7UCJ|1|9|C|1646
7UCJ|1|9|A|1647
7UCJ|1|9|G|1648
7UCJ|1|9|U|1649
7UCJ|1|9|A|1650
7UCJ|1|9|A|1651
*
7UCJ|1|9|U|1673
7UCJ|1|9|G|1674
7UCJ|1|9|A|1675
7UCJ|1|9|U|1676
7UCJ|1|9|U|1677
7UCJ|1|9|A2M|1678
7UCJ|1|9|A|1679
7UCJ|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Cc

40S ribosomal protein S28

Chain FF

Ribosomal protein S5

Chain QQ

40S ribosomal protein S16