3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
7UCJ|1|5|U|354, 7UCJ|1|5|A|362, 7UCJ|1|8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UCJ_033 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0673
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7UCJ|1|5|C|351
7UCJ|1|5|G|352
7UCJ|1|5|A|353
7UCJ|1|5|U|354
7UCJ|1|5|A|355
7UCJ|1|5|G|356
7UCJ|1|5|U|357
7UCJ|1|5|C|358
7UCJ|1|5|A|359
7UCJ|1|5|A|360
7UCJ|1|5|C|361
7UCJ|1|5|A|362
7UCJ|1|5|A|363
7UCJ|1|5|G|364
7UCJ|1|5|U|365
7UCJ|1|5|A|366
7UCJ|1|5|C|367
*
7UCJ|1|5|G|374
7UCJ|1|5|G|375
7UCJ|1|5|A|376
7UCJ|1|5|A|377
7UCJ|1|5|A|378
7UCJ|1|5|G|379
*
7UCJ|1|8|C|21
7UCJ|1|8|U|22
7UCJ|1|8|C|23
7UCJ|1|8|G|24

Current chains

Chain 5
28s rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain Y
60S ribosomal protein L26
Chain j
60S ribosomal protein L37
Chain l
60S ribosomal protein L39

Coloring options:


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