J3_7UCJ_042

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

7UCJ|1|9|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UCJ_042 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.075

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|A|40
7UCJ|1|9|G|41
7UCJ|1|9|A|42
7UCJ|1|9|U|43
7UCJ|1|9|U|44
7UCJ|1|9|A|45
7UCJ|1|9|A|46
7UCJ|1|9|G|47
*
7UCJ|1|9|C|479
7UCJ|1|9|G|480
7UCJ|1|9|C|481
7UCJ|1|9|G|482
7UCJ|1|9|C|483
7UCJ|1|9|A2M|484
7UCJ|1|9|A|485
7UCJ|1|9|A|486
7UCJ|1|9|U|487
*
7UCJ|1|9|A|512
7UCJ|1|9|G|513
7UCJ|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain XX

40S ribosomal protein S23