J3_7UCK_008
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*C(B9H)AUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7UCK|1|5|U|2788, 7UCK|1|5|A|2789
- QA status
- Modified nucleotides: B9H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCK_008 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.1358
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7UCK|1|5|G|2402
7UCK|1|5|A|2403
7UCK|1|5|A|2404
7UCK|1|5|G|2405
*
7UCK|1|5|C|2785
7UCK|1|5|B9H|2786
7UCK|1|5|A|2787
7UCK|1|5|U|2788
7UCK|1|5|A|2789
7UCK|1|5|U|2790
7UCK|1|5|C|2791
*
7UCK|1|5|G|2800
7UCK|1|5|U|2801
7UCK|1|5|C|2802
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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