J3_7UCK_024

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7UCK|1|9|C|1138, 7UCK|1|9|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCK|1|9|C|1094
7UCK|1|9|U|1095
7UCK|1|9|G|1096
*
7UCK|1|9|U|1136
7UCK|1|9|U|1137
7UCK|1|9|C|1138
7UCK|1|9|C|1139
7UCK|1|9|G|1140
*
7UCK|1|9|C|1147
7UCK|1|9|A|1148
7UCK|1|9|A|1149
7UCK|1|9|A|1150
7UCK|1|9|G|1151

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain Aa

eS26

Chain Bb

40S ribosomal protein S27

Chain VV

eS21

Chain WW

40S ribosomal protein S15a