J3_7UCK_025

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

7UCK|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UCK_025 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1364

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UCK|1|9|C|1218
7UCK|1|9|B8Q|1219
7UCK|1|9|A|1220
7UCK|1|9|G|1221
*
7UCK|1|9|C|1645
7UCK|1|9|C|1646
7UCK|1|9|A|1647
7UCK|1|9|G|1648
7UCK|1|9|U|1649
7UCK|1|9|A|1650
7UCK|1|9|A|1651
*
7UCK|1|9|U|1673
7UCK|1|9|G|1674
7UCK|1|9|A|1675
7UCK|1|9|U|1676
7UCK|1|9|U|1677
7UCK|1|9|A2M|1678
7UCK|1|9|A|1679
7UCK|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Cc

40S ribosomal protein S28

Chain FF

Ribosomal protein S5

Chain QQ

40S ribosomal protein S16