J3_7UCK_041
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 7UCK|1|5|U|4374
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCK_041 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0763
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7UCK|1|5|G|4228
7UCK|1|5|U|4229
7UCK|1|5|C|4230
*
7UCK|1|5|G|4331
7UCK|1|5|C|4332
7UCK|1|5|C|4333
7UCK|1|5|U|4334
7UCK|1|5|5MC|4335
7UCK|1|5|A|4336
7UCK|1|5|C|4337
7UCK|1|5|G|4338
7UCK|1|5|A|4339
7UCK|1|5|U|4340
7UCK|1|5|C|4341
7UCK|1|5|C|4342
*
7UCK|1|5|OMG|4370
7UCK|1|5|MHG|4371
7UCK|1|5|U|4372
7UCK|1|5|G|4373
7UCK|1|5|U|4374
7UCK|1|5|C|4375
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a
Coloring options: