J3_7UG6_021
3D structure
- PDB id
- 7UG6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7UG6|1|1|A|398, 7UG6|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UG6_021 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0755
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7UG6|1|1|A|369
7UG6|1|1|U|370
7UG6|1|1|G|371
7UG6|1|1|A|372
7UG6|1|1|A|373
7UG6|1|1|A|374
7UG6|1|1|A|375
7UG6|1|1|G|376
7UG6|1|1|A|377
7UG6|1|1|A|378
7UG6|1|1|C|379
*
7UG6|1|1|G|390
7UG6|1|1|A|391
7UG6|1|1|G|392
7UG6|1|1|U|393
7UG6|1|1|G|394
7UG6|1|1|A|395
7UG6|1|1|A|396
7UG6|1|1|A|397
7UG6|1|1|A|398
7UG6|1|1|A|399
7UG6|1|1|G|400
7UG6|1|1|U|401
7UG6|1|1|A|402
7UG6|1|1|C|403
7UG6|1|1|G|404
*
7UG6|1|2|C|19
7UG6|1|2|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain c
- Ribosome biogenesis protein ALB1
- Chain l
- 60S ribosomal protein L39
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