J3_7UG7_005

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UG7_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1161

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7UG7|1|16|C|936
7UG7|1|16|A|937
7UG7|1|16|A|938
7UG7|1|16|G|939
*
7UG7|1|16|C|1344
7UG7|1|16|U|1345
7UG7|1|16|A|1346
7UG7|1|16|G|1347
7UG7|1|16|U|1348
7UG7|1|16|A|1349
7UG7|1|16|A|1350
*
7UG7|1|16|U|1372
7UG7|1|16|G|1373
7UG7|1|16|A|1374
7UG7|1|16|A|1375
7UG7|1|16|U|1376
7UG7|1|16|A|1377
7UG7|1|16|C|1378
7UG7|1|16|G|1379

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SI

30S ribosomal protein S9