J3_7UG7_017

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UG7_017 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0879

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7UG7|1|23|C|698
7UG7|1|23|A|699
7UG7|1|23|G|700
*
7UG7|1|23|C|732
7UG7|1|23|G|733
7UG7|1|23|A|734
7UG7|1|23|A|735
7UG7|1|23|C|736
*
7UG7|1|23|G|760
7UG7|1|23|A|761
7UG7|1|23|U|762
7UG7|1|23|G|763

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LB

50S ribosomal protein L2