J3_7UG7_022

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UG7_022 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.134

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7UG7|1|23|C|2091
7UG7|1|23|U|2092
7UG7|1|23|G|2093
*
7UG7|1|23|C|2196
7UG7|1|23|U|2197
7UG7|1|23|A|2198
7UG7|1|23|A|2199
7UG7|1|23|C|2200
*
7UG7|1|23|G|2223
7UG7|1|23|G|2224
7UG7|1|23|A|2225
7UG7|1|23|C|2226
7UG7|1|23|A|2227
7UG7|1|23|G|2228

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LB

50S ribosomal protein L2

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28