J3_7UNR_003

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

7UNR|1|A|U|676, 7UNR|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNR_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.101

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNR|1|A|C|673
7UNR|1|A|G|674
7UNR|1|A|A|675
7UNR|1|A|U|676
7UNR|1|A|C|677
7UNR|1|A|U|678
7UNR|1|A|A|679
*
7UNR|1|A|U|763
7UNR|1|A|C|764
7UNR|1|A|G|765
*
7UNR|1|A|C|781
7UNR|1|A|A|782
7UNR|1|A|A|783
7UNR|1|A|G|784

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2