J3_7UNR_029

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAC*GGCCAUAGUG*CGUAC

Length

20 nucleotides

Bulged bases

7UNR|1|A|U|315, 7UNR|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNR_029 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.5093

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UNR|1|A|G|291
7UNR|1|A|G|292
7UNR|1|A|A|293
7UNR|1|A|A|294
7UNR|1|A|C|295
*
7UNR|1|A|G|310
7UNR|1|A|G|311
7UNR|1|A|C|312
7UNR|1|A|C|313
7UNR|1|A|A|314
7UNR|1|A|U|315
7UNR|1|A|A|316
7UNR|1|A|G|317
7UNR|1|A|U|318
7UNR|1|A|G|319
*
7UNR|1|A|C|331
7UNR|1|A|G|332
7UNR|1|A|U|333
7UNR|1|A|A|334
7UNR|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24