J3_7UNR_031

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGUUC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNR_031 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.477

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7UNR|1|A|U|1331
7UNR|1|A|C|1332
7UNR|1|A|G|1333
7UNR|1|A|G|1334
7UNR|1|A|U|1335
7UNR|1|A|U|1336
7UNR|1|A|C|1337
*
7UNR|1|A|G|1368
7UNR|1|A|G|1369
7UNR|1|A|A|1370
7UNR|1|A|A|1371
7UNR|1|A|A|1372
*
7UNR|1|A|U|1389
7UNR|1|A|A|1390

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23