J3_7UNV_006

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG*CGG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1571

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7UNV|1|A|C|1285
7UNV|1|A|G|1286
7UNV|1|A|A|1287
7UNV|1|A|A|1288
7UNV|1|A|A|1289
7UNV|1|A|G|1290
*
7UNV|1|A|C|1615
7UNV|1|A|G|1616
7UNV|1|A|G|1617
*
7UNV|1|A|C|1629
7UNV|1|A|A|1630
7UNV|1|A|A|1631
7UNV|1|A|G|1632

Current chains

Chain A

23S Ribosomal RNA

Nearby chains