J3_7UNV_039

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGGUU*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_039 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1565

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7UNV|1|A|U|1331
7UNV|1|A|C|1332
7UNV|1|A|G|1333
7UNV|1|A|G|1334
7UNV|1|A|U|1335
7UNV|1|A|U|1336
*
7UNV|1|A|G|1369
7UNV|1|A|A|1370
7UNV|1|A|A|1371
7UNV|1|A|A|1372
*
7UNV|1|A|U|1389
7UNV|1|A|A|1390

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23