J3_7UNW_003

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

7UNW|1|A|U|676, 7UNW|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNW_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.0845

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNW|1|A|C|673
7UNW|1|A|G|674
7UNW|1|A|A|675
7UNW|1|A|U|676
7UNW|1|A|C|677
7UNW|1|A|U|678
7UNW|1|A|A|679
*
7UNW|1|A|U|763
7UNW|1|A|C|764
7UNW|1|A|G|765
*
7UNW|1|A|C|781
7UNW|1|A|A|782
7UNW|1|A|A|783
7UNW|1|A|G|784

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2