J3_7UNW_007

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7UNW|1|A|A|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNW_007 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1137

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7UNW|1|A|C|1293
7UNW|1|A|A|1294
7UNW|1|A|A|1295
7UNW|1|A|G|1296
*
7UNW|1|A|C|1595
7UNW|1|A|C|1596
7UNW|1|A|C|1597
7UNW|1|A|A|1598
7UNW|1|A|A|1599
7UNW|1|A|A|1600
7UNW|1|A|C|1601
*
7UNW|1|A|G|1610
7UNW|1|A|U|1611
7UNW|1|A|G|1612

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34