J3_7UNW_008

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNW_008 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1284

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7UNW|1|A|C|2078
7UNW|1|A|U|2079
7UNW|1|A|G|2080
*
7UNW|1|A|C|2183
7UNW|1|A|U|2184
7UNW|1|A|A|2185
7UNW|1|A|A|2186
7UNW|1|A|C|2187
*
7UNW|1|A|G|2210
7UNW|1|A|G|2211
7UNW|1|A|A|2212
7UNW|1|A|C|2213
7UNW|1|A|A|2214
7UNW|1|A|G|2215

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28