J3_7UNW_028

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGCCAUAGUG*CGUAC

Length

20 nucleotides

Bulged bases

7UNW|1|A|U|315, 7UNW|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNW_028 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.5049

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7UNW|1|A|G|291
7UNW|1|A|G|292
7UNW|1|A|A|293
7UNW|1|A|A|294
7UNW|1|A|C|295
*
7UNW|1|A|G|310
7UNW|1|A|G|311
7UNW|1|A|C|312
7UNW|1|A|C|313
7UNW|1|A|A|314
7UNW|1|A|U|315
7UNW|1|A|A|316
7UNW|1|A|G|317
7UNW|1|A|U|318
7UNW|1|A|G|319
*
7UNW|1|A|C|331
7UNW|1|A|G|332
7UNW|1|A|U|333
7UNW|1|A|A|334
7UNW|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24