3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UGG*CUAGA*UGACA
Length
13 nucleotides
Bulged bases
7UNW|1|a|A|647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNW_036 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.0984
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7UNW|1|a|U|580
7UNW|1|a|G|581
7UNW|1|a|G|582
*
7UNW|1|a|C|645
7UNW|1|a|U|646
7UNW|1|a|A|647
7UNW|1|a|G|648
7UNW|1|a|A|649
*
7UNW|1|a|U|745
7UNW|1|a|G|746
7UNW|1|a|A|747
7UNW|1|a|C|748
7UNW|1|a|A|749

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


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