3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNW_037 not in the Motif Atlas
Homologous match to J3_5J7L_052
Geometric discrepancy: 0.0873
The information below is about J3_5J7L_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

7UNW|1|a|C|930
7UNW|1|a|A|931
7UNW|1|a|A|932
7UNW|1|a|G|933
*
7UNW|1|a|C|1338
7UNW|1|a|U|1339
7UNW|1|a|A|1340
7UNW|1|a|G|1341
7UNW|1|a|U|1342
7UNW|1|a|A|1343
7UNW|1|a|A|1344
*
7UNW|1|a|U|1366
7UNW|1|a|G|1367
7UNW|1|a|A|1368
7UNW|1|a|A|1369
7UNW|1|a|U|1370
7UNW|1|a|A|1371
7UNW|1|a|C|1372
7UNW|1|a|G|1373

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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