J3_7UPH_010
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 7UPH|1|I|U|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_010 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.275
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|U|1115
7UPH|1|I|A|1116
7UPH|1|I|U|1117
*
7UPH|1|I|A|1154
7UPH|1|I|G|1155
7UPH|1|I|A|1156
7UPH|1|I|C|1157
*
7UPH|1|I|G|1180
7UPH|1|I|G|1181
7UPH|1|I|U|1182
7UPH|1|I|G|1183
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain W
- 30S ribosomal protein S2
- Chain d
- 30S ribosomal protein S9
- Chain e
- 30S ribosomal protein S10
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