J3_7UPH_013

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAG*CUG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_013 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.5083

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UPH|1|I|G|1488
7UPH|1|I|A|1489
7UPH|1|I|G|1490
*
7UPH|1|I|C|4283
7UPH|1|I|U|4284
7UPH|1|I|G|4285
*
7UPH|1|I|C|4299
7UPH|1|I|C|4300

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3