J3_7UPH_014

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_014 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.2059

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|1530
7UPH|1|I|C|1531
*
7UPH|1|I|G|1974
7UPH|1|I|C|1975
7UPH|1|I|G|1976
7UPH|1|I|A|1977
7UPH|1|I|A|1978
7UPH|1|I|A|1979
7UPH|1|I|A|1980
7UPH|1|I|G|1981
*
7UPH|1|I|C|2009
7UPH|1|I|C|2010

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24