3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
7UPH|1|I|U|2186, 7UPH|1|I|A|2292
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UPH_016 not in the Motif Atlas
Geometric match to J3_5J7L_038
Geometric discrepancy: 0.1825
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

7UPH|1|I|U|2183
7UPH|1|I|G|2184
7UPH|1|I|A|2185
7UPH|1|I|U|2186
7UPH|1|I|C|2187
7UPH|1|I|U|2188
7UPH|1|I|A|2189
*
7UPH|1|I|U|2273
7UPH|1|I|G|2274
7UPH|1|I|G|2275
*
7UPH|1|I|C|2291
7UPH|1|I|A|2292
7UPH|1|I|A|2293
7UPH|1|I|A|2294

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain k
50S ribosomal protein L34

Coloring options:


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