J3_7UPH_016
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 7UPH|1|I|U|2186, 7UPH|1|I|A|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_016 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.1825
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UPH|1|I|U|2183
7UPH|1|I|G|2184
7UPH|1|I|A|2185
7UPH|1|I|U|2186
7UPH|1|I|C|2187
7UPH|1|I|U|2188
7UPH|1|I|A|2189
*
7UPH|1|I|U|2273
7UPH|1|I|G|2274
7UPH|1|I|G|2275
*
7UPH|1|I|C|2291
7UPH|1|I|A|2292
7UPH|1|I|A|2293
7UPH|1|I|A|2294
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L34
Coloring options: